seqminer - Efficiently Read Sequence Data (VCF Format, BCF Format, METAL Format and BGEN Format) into R
Integrate sequencing data (Variant call format, e.g. VCF or BCF) or meta-analysis results in R. This package can help you (1) read VCF/BCF/BGEN files by chromosomal ranges (e.g. 1:100-200); (2) read RareMETAL summary statistics files; (3) read tables from a tabix-indexed files; (4) annotate VCF/BCF files; (5) create customized workflow based on Makefile.
Last updated 2 months ago
annotationbcfbgenmeta-analysisnext-generation-sequencingplinksequencingtabixvcfworkflow
8.54 score 30 stars 6 packages 110 scripts 1.2k downloadscromwellDashboard - A Dashboard to Visualize Scientific Workflows in 'Cromwell'
A dashboard supports the usage of 'cromwell'. 'Cromwell' is a scientific workflow engine for command line users. This package utilizes 'cromwell' REST APIs and provides these convenient functions: timing diagrams for running workflows, 'cromwell' engine status, a tabular workflow list. For more information about 'cromwell', visit <http://cromwell.readthedocs.io>.
Last updated 6 years ago
1.70 score 3 scripts 121 downloads